Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
35
ATAC-seq
8
WGBS
6
single cell RNA-seq
5
total RNA-seq
3
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
77
DNA binding
36
DNA accessibility
11
Transcription
8
DNA methylation
Target of assay
44
control
33
histone
33
histone modification
22
broad histone mark
11
narrow histone mark
Date released
42
August, 2017
35
February, 2023
18
October, 2018
11
May, 2019
10
October, 2019
7
August, 2021
5
February, 2020
2
February, 2021
2
July, 2019
2
March, 2020
1
August, 2018
1
June, 2019
Available data
47
bam
36
bed narrowPeak
23
fastq
13
tsv
9
tagAlign
4
bigWig
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
135
Homo sapiens
Biosample type
127
tissue
6
primary cell
2
cell line
1
in vitro differentiated cells
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
615
GRCh38
hg19
Lab
136
AMP-T2D consortium
organ_slims!
musculature of body
assembly!
hg19
BIOSAMPLE
ASSAY
136 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
aorta
2
2
4
1
omental fat pad
8
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
in vitro differentiated cells
white fat cell
1
See all biosamples
Download