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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
41
DNase-seq
2
FAIRE-seq
Assay category
161
DNA binding
43
DNA accessibility
Target of assay
155
histone
155
histone modification
99
broad histone mark
56
narrow histone mark
6
RNA binding protein
6
transcription factor
Date released
64
May, 2019
63
November, 2017
35
June, 2019
33
October, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
420
bam
368
bigWig
330
bed narrowPeak
204
bigBed narrowPeak
124
tagAlign
94
tsv
58
bed broadPeak
49
bigBed broadPeak
45
bed bed3+
21
fastq
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
204
Homo sapiens
Biosample type
178
tissue
26
primary cell
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
204
AMP
Genome assembly (visualization)
202
GRCh38
141
hg19
Lab
204
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
204 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
6
14
tibial artery
18
2
layer of hippocampus
16
ascending aorta
13
1
caudate nucleus
12
1
+ See 19 more…
primary cell
endothelial cell of umbilical vein
10
2
1
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
+ See 3 more…
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