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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
60
total RNA-seq
47
ATAC-seq
7
DNase-seq
6
single cell RNA-seq
4
WGBS
2
pCHi-C
1
Hi-C
Assay category
99
DNA binding
66
Transcription
54
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
60
histone
60
histone modification
40
broad histone mark
26
control
20
narrow histone mark
13
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
9
November, 2018
8
July, 2019
7
December, 2018
7
January, 2019
6
August, 2021
4
June, 2019
4
March, 2020
3
February, 2020
1
October, 2017
Available data
179
bam
144
bigWig
127
bed narrowPeak
76
bigBed narrowPeak
68
tsv
24
fastq
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
226
Homo sapiens
Biosample type
158
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
226
AMP
Genome assembly (visualization)
187
GRCh38
150
hg19
Lab
226
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
226 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
spleen
20
1
1
2
1
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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