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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
38
ATAC-seq
23
DNase-seq
7
total RNA-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
73
DNA binding
61
DNA accessibility
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
26
October, 2019
21
June, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
March, 2020
Available data
118
bed narrowPeak
105
bam
88
bigWig
80
bigBed narrowPeak
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
14
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
151
Homo sapiens
Biosample type
151
tissue
66
cell line
37
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
151
AMP
Genome assembly (visualization)
123
GRCh38
88
hg19
Lab
151
AMP-T2D consortium
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
2
1
tibial artery
23
1
2
1
aorta
13
1
4
2
1
1
ascending aorta
16
1
2
thoracic aorta
16
1
2
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
pulmonary artery
2
See all biosamples
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