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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
total RNA-seq
8
ChIP-seq
3
ATAC-seq
2
Hi-C
1
WGBS
Assay category
58
Transcription
8
DNA binding
3
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
4
transcription factor
2
broad histone mark
2
control
2
histone
2
histone modification
Date released
56
February, 2021
10
July, 2019
3
October, 2019
2
November, 2017
1
March, 2020
Available data
185
bam
155
bigWig
133
bed narrowPeak
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
72
Homo sapiens
Biosample type
56
cell line
8
primary cell
8
tissue
Organ
542
connective tissue
532
pancreas
415
adipose tissue
264
liver
225
epithelium
130
heart
96
brain
72
vasculature
71
blood vessel
60
artery
58
bone element
29
embryo
27
kidney
21
musculature of body
7
limb
5
nerve
3
spleen
2
vein
1
blood
1
bodily fluid
1
pericardium
1
pituitary gland
Project
72
AMP
Genome assembly (visualization)
71
hg19
66
GRCh38
Lab
72
AMP-T2D consortium
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
cell line
smooth muscle cell of the coronary artery
52
4
primary cell
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
choroid plexus epithelial cell
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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tissue
thoracic aorta
2
1
aorta
1
1
ascending aorta
1
coronary artery
1
tibial artery
1
See all biosamples
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