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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
7
DNase-seq
4
Hi-C
3
total RNA-seq
2
RRBS
1
FAIRE-seq
1
small RNA-seq
Assay category
27
DNA binding
8
DNA accessibility
4
3D chromatin structure
4
Transcription
2
DNA methylation
Target of assay
25
histone
25
histone modification
13
broad histone mark
12
narrow histone mark
control
2
RNA binding protein
2
transcription factor
Date released
19
October, 2019
13
June, 2019
8
July, 2019
4
November, 2017
1
March, 2020
Available data
39
bam
38
bigWig
30
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
4
fastq
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
45
Homo sapiens
Biosample type
195
tissue
64
cell line
45
primary cell
Organ
385
epithelium
334
pancreas
36
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
45
AMP
Genome assembly (visualization)
41
hg19
33
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
control
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
FAIRE-seq
small RNA-seq
primary cell
endothelial cell of umbilical vein
15
2
2
1
skeletal muscle satellite cell
7
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
skeletal muscle cell
1
1
1
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