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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
RRBS
1
pCHi-C
Assay category
9
Transcription
5
3D chromatin structure
1
DNA methylation
Date released
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
1
October, 2019
Available data
bam
87
bigWig
68
tsv
bed narrowPeak
17
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
6
tagAlign
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
16
Homo sapiens
Biosample type
11
tissue
5
primary cell
Organ
243
pancreas
195
epithelium
146
kidney
106
heart
93
bone element
56
liver
44
connective tissue
25
eye
22
brain
20
lung
20
musculature of body
17
adipose tissue
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
8
skeleton
7
limb
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
16
AMP
Genome assembly (visualization)
6
hg19
Lab
16
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
histone
files.file_type!
bam
bed narrowPeak
BIOSAMPLE
ASSAY
16 results
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Clear Filters
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
tissue
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
coronary artery
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
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