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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
DNase-seq
7
ChIP-seq
6
total RNA-seq
3
ATAC-seq
2
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
15
DNA accessibility
7
DNA binding
6
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
histone
68
histone modification
43
broad histone mark
25
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
Date released
February, 2021
10
July, 2019
7
June, 2019
6
October, 2019
4
November, 2017
3
May, 2019
1
March, 2020
Available data
55
bed narrowPeak
48
bam
31
bigWig
17
bigBed narrowPeak
16
tsv
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
31
Homo sapiens
Biosample type
16
tissue
15
primary cell
Organ
540
liver
455
pancreas
185
epithelium
101
kidney
85
connective tissue
71
heart
56
brain
54
blood
54
bodily fluid
43
limb
41
musculature of body
37
adipose tissue
31
vasculature
27
blood vessel
18
embryo
18
ureter
10
spleen
9
artery
7
nerve
5
eye
3
vein
1
pericardium
Project
31
AMP
Genome assembly (visualization)
29
hg19
26
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
month_released!
February, 2021
BIOSAMPLE
ASSAY
31 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
FAIRE-seq
WGBS
tissue
coronary artery
2
1
1
thoracic aorta
1
2
1
ascending aorta
1
1
1
tibial artery
2
1
aorta
1
1
primary cell
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
endothelial cell of umbilical vein
2
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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