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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
6
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
7
DNA accessibility
6
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
6
October, 2019
5
July, 2019
4
June, 2019
4
November, 2017
1
March, 2020
Available data
15
bam
15
bigWig
9
bed narrowPeak
9
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
4
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
20
Homo sapiens
Biosample type
70
tissue
66
cell line
20
primary cell
Organ
340
epithelium
288
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
20
AMP
Genome assembly (visualization)
17
hg19
10
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
histone
organ_slims!
limb
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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