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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
DNase-seq
2
Hi-C
Assay category
11
DNA accessibility
2
3D chromatin structure
Date released
7
June, 2019
4
October, 2019
2
July, 2019
Available data
114
bam
87
bigWig
68
tsv
67
bed narrowPeak
17
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
6
tagAlign
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
13
Homo sapiens
Biosample type
8
primary cell
5
tissue
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
27
connective tissue
18
epithelium
18
ureter
17
pancreas
13
vasculature
11
blood vessel
10
liver
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
embryo
1
spleen
Project
13
AMP
Genome assembly (visualization)
12
hg19
11
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
13 results
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DNase-seq
Hi-C
primary cell
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
+ See 1 more…
tissue
coronary artery
2
tibial artery
2
ascending aorta
1
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