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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
7
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
17
DNA binding
9
DNA accessibility
9
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
51
histone
histone modification
31
broad histone mark
20
narrow histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
11
May, 2019
9
July, 2019
6
October, 2019
5
June, 2019
4
August, 2021
4
March, 2020
4
November, 2017
1
February, 2020
Available data
32
bam
22
bigWig
13
bed narrowPeak
12
bigBed narrowPeak
10
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
44
Homo sapiens
Biosample type
26
tissue
18
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
24
hg19
17
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
histone modification
organ_slims!
artery
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
aorta
2
1
1
4
2
1
thoracic aorta
5
2
1
ascending aorta
4
1
2
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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