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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
51
ChIP-seq
45
ATAC-seq
DNase-seq
2
Hi-C
2
single cell RNA-seq
1
FAIRE-seq
Assay category
58
Transcription
51
DNA binding
46
DNA accessibility
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
23
broad histone mark
12
narrow histone mark
11
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
43
October, 2019
35
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
1
March, 2020
Available data
116
bam
94
bigWig
81
bed narrowPeak
58
tsv
32
bigBed narrowPeak
6
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
157
Homo sapiens
Biosample type
69
tissue
66
cell line
22
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
323
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
157
AMP
Genome assembly (visualization)
134
GRCh38
104
hg19
Lab
157
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
coronary artery
1
5
36
tibial artery
1
23
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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