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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
DNase-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
17
DNA binding
2
3D chromatin structure
1
DNA accessibility
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
19
October, 2019
3
March, 2020
Available data
18
bam
13
bigWig
11
bed narrowPeak
11
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
22
Homo sapiens
Biosample type
20
primary cell
2
tissue
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
323
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
15
hg19
10
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
Hi-C
pCHi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
tissue
sigmoid colon
1
small intestine
1
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