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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
ChIP-seq
19
total RNA-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
FAIRE-seq
1
RRBS
Assay category
34
DNA accessibility
22
DNA binding
19
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
41
October, 2019
31
February, 2023
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
45
bed narrowPeak
26
bam
20
bigWig
18
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
5
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
82
Homo sapiens
Biosample type
56
tissue
26
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
523
epithelium
491
adipose tissue
353
heart
353
kidney
285
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
50
hg19
18
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
82 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
tissue
islet of Langerhans
1
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
endothelial cell of umbilical vein
17
2
2
retinal pigment epithelial cell
3
1
1
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