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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
28
ChIP-seq
4
DNase-seq
3
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
399
Transcription
28
DNA binding
7
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
11
histone
11
histone modification
6
narrow histone mark
5
RNA binding protein
5
broad histone mark
Date released
386
February, 2021
16
August, 2017
12
July, 2019
12
October, 2019
5
October, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
435
bam
434
bigWig
398
tsv
23
bed narrowPeak
23
fastq
21
bigBed narrowPeak
8
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
436
Homo sapiens
Biosample type
422
tissue
14
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
436
AMP
Genome assembly (visualization)
443
hg19
436
GRCh38
Lab
436
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
436 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
382
1
2
white adipose tissue
12
omental fat pad
4
3
2
1
1
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
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primary cell
endothelial cell of umbilical vein
10
2
mesenchymal stem cell of adipose
1
1
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