Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
31
ChIP-seq
6
ATAC-seq
4
DNase-seq
3
small RNA-seq
2
Hi-C
1
FAIRE-seq
Assay category
399
Transcription
31
DNA binding
11
DNA accessibility
2
3D chromatin structure
Target of assay
17
transcription factor
14
histone
14
histone modification
7
broad histone mark
7
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
17
October, 2019
15
August, 2017
12
July, 2019
5
October, 2018
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
438
bigWig
436
bam
398
tsv
26
bed narrowPeak
23
bigBed narrowPeak
21
fastq
8
bed bed3+
7
bed broadPeak
6
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tagAlign
1
tar
Organism
443
Homo sapiens
Biosample type
424
tissue
19
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
443
AMP
Genome assembly (visualization)
443
hg19
436
GRCh38
Lab
443
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
443 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
FAIRE-seq
tissue
adipose tissue
382
1
3
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 2 more…
primary cell
endothelial cell of umbilical vein
12
2
2
1
mesenchymal stem cell of adipose
1
1
See all biosamples
Download