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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
66
DNA binding
4
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
13
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
7
broad histone mark
6
narrow histone mark
Date released
27
December, 2018
16
October, 2019
15
January, 2019
12
November, 2018
1
January, 2018
1
March, 2020
Available data
70
bigWig
69
bam
67
bed narrowPeak
67
bigBed narrowPeak
54
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
72
Homo sapiens
Biosample type
55
cell line
17
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
72
AMP
Genome assembly (visualization)
72
hg19
66
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent control
BIOSAMPLE
ASSAY
72 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
GM12878
54
1
primary cell
endothelial cell of umbilical vein
12
2
2
1
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