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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
snATAC-seq
2
Hi-C
1
ATAC-seq
Assay category
9
DNA accessibility
2
3D chromatin structure
Date released
8
January, 2021
1
January, 2018
1
March, 2020
1
October, 2019
Available data
bam
70
bigWig
67
bed narrowPeak
67
bigBed narrowPeak
60
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
11
Homo sapiens
Biosample type
10
primary cell
1
cell line
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
spleen
1
stomach
1
urinary bladder
Project
8
T1D
3
AMP
Genome assembly (visualization)
3
hg19
Lab
8
Kyle Gaulton, UCSD
3
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
organ_slims!
spleen
BIOSAMPLE
ASSAY
11 results
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Clear Filters
snATAC-seq
Hi-C
ATAC-seq
primary cell
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
2
cell line
GM12878
1
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