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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
17
DNA binding
11
DNA accessibility
9
Transcription
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
19
April, 2020
19
October, 2019
2
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
bed bed3+
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
39
Homo sapiens
Biosample type
20
primary cell
20
tissue
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
19
LungMap
Genome assembly (visualization)
15
hg19
10
GRCh38
Lab
21
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
1
tissue
lung
10
9
1
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