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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
19
DNA binding
2
3D chromatin structure
1
DNA accessibility
Target of assay
17
histone
17
histone modification
10
narrow histone mark
7
broad histone mark
2
control
Date released
21
October, 2019
2
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
23
Homo sapiens
Biosample type
18
primary cell
5
tissue
Organ
939
pancreas
728
liver
675
connective tissue
502
epithelium
489
adipose tissue
323
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
23 results
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Clear Filters
ChIP-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
15
2
1
tissue
islet of Langerhans
4
ovary
1
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