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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
15
DNA binding
2
DNA accessibility
1
3D chromatin structure
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
2
control
Date released
17
October, 2019
1
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
bigBed broadPeak
2
bed bed3+
1
bedpe bed3+
1
hic
1
tar
Organism
18
Homo sapiens
Biosample type
17
primary cell
1
tissue
Organ
935
pancreas
728
liver
675
connective tissue
497
epithelium
489
adipose tissue
363
heart
269
kidney
248
brain
218
vasculature
216
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
17
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
audit script error
files.file_type!
bigBed broadPeak
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
18 results
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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
15
1
1
tissue
islet of Langerhans
1
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