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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
90
ChIP-seq
6
ATAC-seq
6
WGBS
4
DNase-seq
3
small RNA-seq
FAIRE-seq
1
Hi-C
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
90
DNA binding
10
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
47
histone
47
histone modification
29
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
21
October, 2019
12
July, 2019
2
February, 2020
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
461
bam
439
bigWig
400
tsv
44
fastq
25
bed narrowPeak
22
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
509
Homo sapiens
Biosample type
487
tissue
22
primary cell
1
in vitro differentiated cells
Organ
930
pancreas
788
liver
682
connective tissue
517
epithelium
490
adipose tissue
386
heart
351
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
20
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
510
AMP
Genome assembly (visualization)
441
hg19
436
GRCh38
Lab
510
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
March, 2020
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
510 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
Hi-C
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
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primary cell
endothelial cell of umbilical vein
17
2
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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