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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
2
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
17
DNA binding
13
DNA accessibility
9
Transcription
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
19
April, 2020
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
39
Homo sapiens
Biosample type
21
primary cell
19
tissue
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
352
kidney
346
heart
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
21
AMP
19
LungMap
Genome assembly (visualization)
16
hg19
12
GRCh38
Lab
21
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
month_released!
March, 2020
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
DNase-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
tissue
lung
10
9
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