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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
15
DNA binding
11
DNA accessibility
9
Transcription
1
3D chromatin structure
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
2
control
Date released
19
April, 2020
17
October, 2019
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
35
Homo sapiens
Biosample type
19
tissue
17
primary cell
Organ
911
pancreas
725
liver
672
connective tissue
496
epithelium
487
adipose tissue
356
heart
274
kidney
237
brain
215
vasculature
213
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
45
musculature of body
41
nerve
37
embryo
23
spleen
19
lung
17
vein
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
19
LungMap
17
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
19
Xin Sun, UCSD
17
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
March, 2020
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
36 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
FAIRE-seq
Hi-C
tissue
lung
10
9
primary cell
endothelial cell of umbilical vein
15
1
1
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