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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
51
ChIP-seq
45
ATAC-seq
6
DNase-seq
2
Hi-C
2
single cell RNA-seq
FAIRE-seq
Assay category
58
Transcription
51
DNA accessibility
51
DNA binding
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
23
broad histone mark
12
narrow histone mark
11
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
46
October, 2019
35
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
121
bam
99
bigWig
86
bed narrowPeak
58
tsv
37
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
6
tagAlign
2
hic
1
bedpe bed3+
Organism
162
Homo sapiens
Biosample type
73
tissue
66
cell line
23
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
523
epithelium
491
adipose tissue
393
heart
353
kidney
285
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
162
AMP
Genome assembly (visualization)
140
GRCh38
109
hg19
Lab
162
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
adrenal gland
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
162 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
tissue
coronary artery
1
5
36
2
tibial artery
1
23
1
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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