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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
14
total RNA-seq
2
Hi-C
1
GRO-seq
Assay category
15
DNA binding
14
Transcription
2
3D chromatin structure
Target of assay
9
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
8
August, 2021
8
October, 2019
7
February, 2018
5
December, 2017
2
May, 2021
1
January, 2018
1
March, 2020
Available data
56
bam
44
bigWig
bed narrowPeak
27
fastq
14
tsv
13
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
32
Homo sapiens
Biosample type
15
in vitro differentiated cells
9
primary cell
8
cell line
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
1
hg18
Lab
32
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
organ_slims!
adrenal gland
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
GRO-seq
in vitro differentiated cells
pancreatic endoderm
6
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
7
2
cell line
H1-hESC
8
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