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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
35
DNase-seq
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
WGBS
Assay category
39
DNA binding
37
DNA accessibility
6
Transcription
1
DNA methylation
Target of assay
39
histone
39
histone modification
23
broad histone mark
16
narrow histone mark
Date released
41
June, 2019
15
October, 2019
13
August, 2017
6
May, 2019
5
July, 2019
2
March, 2020
1
January, 2018
Available data
83
bigWig
77
bam
73
bed narrowPeak
60
bigBed narrowPeak
50
bed broadPeak
37
bigBed broadPeak
36
bed bed3+
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
4
hic
3
bedpe bed3+
2
fastq
1
tar
1
txt
Organism
83
Homo sapiens
Biosample type
57
tissue
26
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
83
AMP
Genome assembly (visualization)
82
hg19
65
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
organ_slims!
ovary
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
FAIRE-seq
WGBS
tissue
muscle of leg
6
13
1
muscle of arm
17
skeletal muscle tissue
13
1
1
1
psoas muscle
2
forelimb muscle
1
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primary cell
endothelial cell of umbilical vein
12
2
1
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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