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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
GRO-seq
Assay category
39
DNA binding
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
3
transcription factor
Date released
21
October, 2019
13
December, 2017
9
February, 2018
1
January, 2018
1
March, 2020
Available data
42
bam
30
bigWig
27
bed narrowPeak
23
fastq
13
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
45
Homo sapiens
Biosample type
23
in vitro differentiated cells
22
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
45
AMP
Genome assembly (visualization)
32
hg19
27
GRCh38
1
hg18
Lab
45
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
endothelial cell of umbilical vein
17
2
2
1
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