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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Assay category
39
DNA binding
14
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
3
transcription factor
Date released
17
October, 2019
13
December, 2017
9
February, 2018
Available data
39
bam
26
bigWig
24
bed narrowPeak
22
fastq
10
bigBed narrowPeak
3
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
39
Homo sapiens
Biosample type
22
in vitro differentiated cells
17
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
39
AMP
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
in vitro differentiated cells
pancreatic endoderm
18
Hepatic endoderm
4
primary cell
endothelial cell of umbilical vein
17
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