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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
Hi-C
1
FAIRE-seq
1
GRO-seq
Assay category
14
DNA binding
2
3D chromatin structure
1
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
9
October, 2019
4
December, 2017
3
February, 2018
1
January, 2018
1
March, 2020
Available data
15
bam
8
fastq
4
bigWig
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
tar
Organism
18
Homo sapiens
Biosample type
10
primary cell
8
in vitro differentiated cells
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
46
hg19
GRCh38
1
hg18
Lab
18
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
Hi-C
FAIRE-seq
GRO-seq
primary cell
endothelial cell of umbilical vein
7
2
1
in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
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