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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
GRO-seq
Assay category
39
DNA binding
6
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
3
transcription factor
Date released
21
October, 2019
13
December, 2017
13
February, 2018
2
May, 2021
1
January, 2018
1
March, 2020
Available data
48
bam
36
bigWig
27
bed narrowPeak
27
fastq
13
bigBed narrowPeak
6
tsv
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
51
Homo sapiens
Biosample type
29
in vitro differentiated cells
22
primary cell
cell line
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
38
hg19
33
GRCh38
1
hg18
Lab
51
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
biosample_type!
cell line
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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