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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
2
Hi-C
Assay category
13
DNA binding
2
3D chromatin structure
Target of assay
9
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
6
October, 2019
5
December, 2017
3
February, 2018
1
March, 2020
Available data
56
bam
bigWig
27
bed narrowPeak
27
fastq
14
tsv
13
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
15
Homo sapiens
Biosample type
8
in vitro differentiated cells
7
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
15
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
15 results
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Clear Filters
ChIP-seq
Hi-C
in vitro differentiated cells
pancreatic endoderm
6
Hepatic endoderm
2
primary cell
endothelial cell of umbilical vein
5
2
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