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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
14
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
GRO-seq
Assay category
26
DNA binding
14
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
5
control
Date released
21
October, 2019
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
1
March, 2020
Available data
43
bam
36
bigWig
19
bed narrowPeak
14
fastq
14
tsv
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
46
Homo sapiens
Biosample type
22
primary cell
16
in vitro differentiated cells
8
cell line
Organ
946
pancreas
728
liver
684
connective tissue
505
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
24
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
37
hg19
32
GRCh38
1
hg18
Lab
46
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
month_released!
December, 2017
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
GRO-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
in vitro differentiated cells
pancreatic endoderm
9
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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