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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
14
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
27
DNA binding
14
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
23
histone
23
histone modification
12
narrow histone mark
11
broad histone mark
3
transcription factor
1
control
Date released
16
October, 2019
10
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
1
March, 2020
Available data
44
bam
43
bigWig
27
bed narrowPeak
19
fastq
14
tsv
13
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
46
Homo sapiens
Biosample type
21
in vitro differentiated cells
17
primary cell
8
cell line
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
46
AMP
Genome assembly (visualization)
46
hg19
41
GRCh38
1
hg18
Lab
46
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
3
inconsistent control read length
organ_slims!
blood
BIOSAMPLE
ASSAY
46 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
12
2
2
1
cell line
H1-hESC
8
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