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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
8
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
17
DNA binding
8
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
8
August, 2021
1
March, 2020
1
May, 2021
Available data
28
bam
23
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
8
tsv
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
31
Homo sapiens
Biosample type
in vitro differentiated cells
23
primary cell
8
cell line
Organ
943
pancreas
776
liver
587
connective tissue
500
epithelium
490
adipose tissue
392
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
1
T1D
Genome assembly (visualization)
25
hg19
20
GRCh38
Lab
30
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
megakaryocyte
1
cell line
H1-hESC
8
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