Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
10
ChIP-seq
1
GRO-seq
1
Hi-C
Assay category
14
Transcription
10
DNA binding
1
3D chromatin structure
Target of assay
12
histone
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
8
August, 2021
7
December, 2017
7
February, 2018
October, 2019
2
May, 2021
1
January, 2018
1
March, 2020
Available data
24
bam
18
bigWig
15
fastq
14
tsv
3
bed narrowPeak
1
bed bed3+
1
bedpe bed3+
1
hic
Organism
26
Homo sapiens
Biosample type
17
in vitro differentiated cells
8
cell line
1
primary cell
Organ
784
pancreas
686
liver
603
connective tissue
458
adipose tissue
417
epithelium
302
kidney
293
heart
159
bone element
151
vasculature
146
blood vessel
113
artery
90
brain
68
blood
68
bodily fluid
63
musculature of body
47
limb
39
eye
25
embryo
20
lung
19
spleen
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
26
AMP
Genome assembly (visualization)
19
hg19
18
GRCh38
1
hg18
Lab
26
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
histone modification
month_released!
October, 2019
BIOSAMPLE
ASSAY
26 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
Hi-C
in vitro differentiated cells
pancreatic endoderm
4
8
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
endothelial cell of umbilical vein
1
Download