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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
ChIP-seq
19
total RNA-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
29
DNA accessibility
22
DNA binding
19
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
40
October, 2019
31
February, 2023
3
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
46
bed narrowPeak
27
bam
21
bigWig
19
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
bed bed3+
5
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
77
Homo sapiens
Biosample type
53
tissue
24
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
45
hg19
12
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
tissue
islet of Langerhans
1
2
14
4
retina
15
3
pigmented layer of retina
12
2
primary cell
endothelial cell of umbilical vein
17
2
1
retinal pigment epithelial cell
3
1
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