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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
20
ChIP-seq
19
total RNA-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
29
DNA accessibility
20
DNA binding
19
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
16
histone
16
histone modification
9
narrow histone mark
7
broad histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
38
October, 2019
31
February, 2023
3
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
46
bed narrowPeak
27
bam
21
bigWig
19
bigBed narrowPeak
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
5
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
75
Homo sapiens
Biosample type
53
tissue
22
primary cell
Organ
925
pancreas
728
liver
674
connective tissue
502
epithelium
488
adipose tissue
323
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
43
hg19
12
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
75 results
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ATAC-seq
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
tissue
islet of Langerhans
1
2
14
4
retina
15
3
pigmented layer of retina
12
2
primary cell
endothelial cell of umbilical vein
15
2
1
retinal pigment epithelial cell
3
1
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