Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
total RNA-seq
10
ChIP-seq
4
pCHi-C
2
Hi-C
1
ATAC-seq
1
RRBS
Assay category
19
Transcription
10
DNA binding
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
7
histone
7
histone modification
4
broad histone mark
3
control
3
narrow histone mark
Date released
29
October, 2019
4
February, 2023
1
February, 2020
1
July, 2019
1
June, 2019
1
March, 2020
Available data
bed narrowPeak
27
bam
21
bigWig
19
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
5
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
37
Homo sapiens
Biosample type
26
tissue
11
primary cell
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
5
hg19
Lab
37
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
37 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
Hi-C
ATAC-seq
RRBS
tissue
islet of Langerhans
14
2
4
1
retina
3
pigmented layer of retina
2
primary cell
endothelial cell of umbilical vein
7
2
retinal pigment epithelial cell
1
1
Download