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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
10
ChIP-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
29
DNA accessibility
19
Transcription
10
DNA binding
2
3D chromatin structure
1
DNA methylation
Target of assay
7
histone
7
histone modification
4
broad histone mark
3
control
3
narrow histone mark
Date released
31
February, 2023
30
October, 2019
1
February, 2020
1
July, 2019
1
June, 2019
1
March, 2020
Available data
28
bed narrowPeak
9
bam
5
tsv
3
bigWig
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed narrowPeak
1
tar
Organism
65
Homo sapiens
Biosample type
53
tissue
12
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
51
hg19
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
thymus
assembly!
GRCh38
BIOSAMPLE
ASSAY
65 results
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ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
primary cell
endothelial cell of umbilical vein
7
2
1
retinal pigment epithelial cell
1
1
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