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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
ChIP-seq
19
total RNA-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
35
DNA accessibility
19
DNA binding
19
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
control
1
RNA binding protein
1
transcription factor
Date released
40
October, 2019
31
February, 2023
6
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
46
bed narrowPeak
24
bam
21
bigWig
19
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
5
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
80
Homo sapiens
Biosample type
56
tissue
24
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
51
hg19
18
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
control
BIOSAMPLE
ASSAY
80 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
tissue
islet of Langerhans
1
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
endothelial cell of umbilical vein
15
2
2
1
retinal pigment epithelial cell
2
1
1
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