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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
47
ATAC-seq
32
DNase-seq
8
WGBS
5
Hi-C
3
pCHi-C
2
RRBS
1
FAIRE-seq
Assay category
Transcription
151
DNA binding
80
DNA accessibility
10
DNA methylation
5
3D chromatin structure
Target of assay
112
histone
112
histone modification
66
broad histone mark
46
narrow histone mark
22
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
35
February, 2023
35
June, 2019
27
October, 2019
21
May, 2019
14
February, 2021
14
July, 2019
6
March, 2020
Available data
204
bed narrowPeak
169
bigWig
161
bam
107
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
32
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
5
hic
4
bedpe bed3+
3
tsv
1
tar
Organism
249
Homo sapiens
Biosample type
204
tissue
31
primary cell
14
cell line
Organ
583
liver
464
pancreas
301
epithelium
262
brain
229
kidney
227
heart
169
vasculature
163
blood vessel
115
connective tissue
115
limb
97
bone element
89
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
249
AMP
Genome assembly (visualization)
208
GRCh38
135
hg19
Lab
209
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
1
audit script error
biosample_type!
in vitro differentiated cells
assay_slims!
Transcription
BIOSAMPLE
ASSAY
249 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
FAIRE-seq
tissue
heart left ventricle
35
2
3
4
1
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
cardiac fibroblast
5
3
1
cell line
smooth muscle cell of the coronary artery
6
8
See all biosamples
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