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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
14
DNase-seq
8
snATAC-seq
6
total RNA-seq
3
RRBS
2
Hi-C
1
FAIRE-seq
Assay category
32
DNA binding
23
DNA accessibility
6
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
25
histone
25
histone modification
14
broad histone mark
11
narrow histone mark
5
control
2
RNA binding protein
2
transcription factor
Date released
32
October, 2019
13
June, 2019
8
January, 2021
7
July, 2019
5
May, 2019
1
March, 2020
Available data
51
bam
43
bigWig
35
bed narrowPeak
29
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
bed bed3+
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
66
Homo sapiens
Biosample type
299
tissue
80
cell line
66
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
58
AMP
8
T1D
Genome assembly (visualization)
42
hg19
40
GRCh38
Lab
58
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
DNase-seq
snATAC-seq
total RNA-seq
RRBS
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
epithelial cell of proximal tubule
10
1
1
1
kidney epithelial cell
5
1
1
1
peripheral blood mononuclear cell
8
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney capillary endothelial cell
1
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