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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
ATAC-seq
6
Hi-C
3
total RNA-seq
Assay category
23
DNA binding
6
3D chromatin structure
6
DNA accessibility
3
Transcription
Target of assay
19
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
23
October, 2019
6
February, 2021
4
July, 2019
3
February, 2020
1
March, 2020
1
May, 2019
Available data
134
bam
bigWig
105
bed narrowPeak
97
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
38
Homo sapiens
Biosample type
31
tissue
7
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
8
hg19
6
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
tissue
tibial nerve
11
1
tibial artery
5
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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primary cell
endothelial cell of umbilical vein
5
2
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