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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
7
ChIP-seq
6
ATAC-seq
5
Hi-C
3
total RNA-seq
WGBS
Assay category
38
DNA accessibility
7
DNA binding
5
3D chromatin structure
3
Transcription
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
1
March, 2020
Available data
45
bam
44
bed narrowPeak
38
bigBed narrowPeak
38
bigWig
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
3
tsv
1
bedpe bed3+
1
hic
Organism
53
Homo sapiens
Biosample type
52
tissue
1
primary cell
Organ
877
pancreas
779
liver
674
connective tissue
484
adipose tissue
442
epithelium
377
heart
324
kidney
200
brain
187
vasculature
181
blood vessel
159
bone element
115
artery
95
musculature of body
69
blood
69
bodily fluid
52
limb
40
eye
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
53
AMP
Genome assembly (visualization)
45
hg19
43
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
assay_title!
WGBS
BIOSAMPLE
ASSAY
53 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
tissue
muscle of leg
13
7
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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primary cell
endothelial cell of umbilical vein
1
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