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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
DNase-seq
7
ChIP-seq
6
ATAC-seq
5
Hi-C
3
total RNA-seq
1
WGBS
Assay category
37
DNA accessibility
7
DNA binding
5
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
31
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
45
bam
43
bed narrowPeak
38
bigWig
37
bigBed narrowPeak
31
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
3
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
53
Homo sapiens
Biosample type
52
tissue
1
primary cell
Organ
847
pancreas
784
liver
661
connective tissue
489
adipose tissue
399
epithelium
379
heart
314
kidney
199
brain
188
vasculature
183
blood vessel
115
artery
87
musculature of body
75
bone element
69
blood
69
bodily fluid
52
limb
40
eye
31
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
vein
Project
53
AMP
Genome assembly (visualization)
44
hg19
43
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
October, 2019
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
53 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
muscle of leg
12
7
1
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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primary cell
endothelial cell of umbilical vein
1
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