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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
38
DNase-seq
8
ATAC-seq
7
total RNA-seq
6
Hi-C
1
FAIRE-seq
Assay category
83
DNA binding
47
DNA accessibility
7
Transcription
6
3D chromatin structure
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
90
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
1
March, 2020
Available data
134
bam
106
bigWig
105
bed narrowPeak
97
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
bigBed bedMethyl
1
tar
Organism
143
Homo sapiens
Biosample type
121
tissue
22
primary cell
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
143
AMP
Genome assembly (visualization)
113
hg19
107
GRCh38
Lab
143
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
gonad
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
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primary cell
endothelial cell of umbilical vein
17
2
2
1
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