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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
38
DNase-seq
8
ATAC-seq
7
total RNA-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
76
DNA binding
47
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
58
histone
58
histone modification
39
broad histone mark
19
narrow histone mark
18
control
Date released
90
October, 2019
32
June, 2019
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
127
bam
100
bigWig
99
bed narrowPeak
91
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
137
Homo sapiens
Biosample type
115
tissue
22
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
107
hg19
103
GRCh38
Lab
137
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
gonad
month_released!
May, 2019
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
1
4
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primary cell
endothelial cell of umbilical vein
17
2
2
1
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