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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
DNase-seq
19
ChIP-seq
8
ATAC-seq
7
total RNA-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
47
DNA accessibility
19
DNA binding
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
32
June, 2019
32
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
1
May, 2019
Available data
71
bam
47
bed narrowPeak
46
bigWig
39
bigBed narrowPeak
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
80
Homo sapiens
Biosample type
73
tissue
7
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
53
hg19
51
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
gonad
target.investigated_as!
histone
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
2
11
1
5
muscle of arm
17
muscle of leg
13
1
1
tibial artery
2
5
1
1
gastrocnemius medialis
1
4
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primary cell
endothelial cell of umbilical vein
2
2
2
1
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