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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
175
total RNA-seq
22
ATAC-seq
8
DNase-seq
4
Hi-C
4
WGBS
3
small RNA-seq
2
RRBS
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
191
DNA binding
179
Transcription
31
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
100
histone modification
99
histone
57
narrow histone mark
50
control
42
broad histone mark
41
transcription factor
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
54
August, 2017
40
May, 2022
28
October, 2019
10
July, 2019
7
November, 2018
5
December, 2019
4
August, 2021
4
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
335
bam
305
bigWig
159
tsv
146
bed narrowPeak
98
fastq
78
bigBed narrowPeak
74
tagAlign
14
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
1
csv
1
hdf5
1
tar
Organism
412
Homo sapiens
Biosample type
cell line
361
tissue
36
primary cell
15
in vitro differentiated cells
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
287
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
412
AMP
Genome assembly (visualization)
312
hg19
275
GRCh38
Lab
372
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
cell line
BIOSAMPLE
ASSAY
412 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
small RNA-seq
RRBS
FAIRE-seq
pCHi-C
single cell RNA-seq
tissue
liver
145
167
20
2
1
3
1
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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